PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G194400.2
Common NameB456_007G194400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 240aa    MW: 26939.3 Da    PI: 4.8727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G194400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-091059154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRd++N+ f eL  +l ++     +K++K++iL  +++ +k+L
  Gorai.007G194400.2 10 RKVQKADREKLRRDKLNEQFVELGNMLDPD----RPKNDKVTILVDTTQMLKDL 59
                        5677889********************997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.652959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-121078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-71063No hitNo description
Gene3DG3DSA:4.10.280.101.8E-111081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-71059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-51565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEANDPIAAR KVQKADREKL RRDKLNEQFV ELGNMLDPDR PKNDKVTILV DTTQMLKDLT  60
VEVNRLRAEC SSLTEESREL SQEKNELREE KASLKADIEN LNIQYQQRLS VMFPWTGIEP  120
SVVVAPPYSY PAPLHVPTGP IAMHPSLQPY PYFLNHGPGA VANPCSTYIP YSMEQPSSQP  180
TSSSHLSFQR DCRGKPMDDQ GGSNRDSCDG SNDVVTELEL KIPGSSTNQV YFINLYPWL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046692.11e-128Basic helix-loop-helix DNA-binding superfamily protein isoform 1
SwissprotQ9LT236e-69BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0D2PC021e-180A0A0D2PC02_G
STRINGGLYMA07G26910.12e-99(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-69bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]